Imaging Neuroscience
● MIT Press
Preprints posted in the last 7 days, ranked by how well they match Imaging Neuroscience's content profile, based on 242 papers previously published here. The average preprint has a 0.14% match score for this journal, so anything above that is already an above-average fit.
Cunha, T.; Grundei, M.; Gregersen, F.; Nierhaus, T.; Hanson, L. G.; Blankenburg, F.; Thielscher, A.
Show abstract
Background: Understanding how transcranial direct current stimulation (tDCS) affects brain activity critically benefits from the use of functional magnetic resonance imaging (fMRI) to measure the related BOLD (blood-oxygenation-level-dependent) signal changes. However, the small magnetic fields induced by the stimulation currents can cause artifacts in the fMRI images that can compromise findings from concurrent tDCS-fMRI studies. Objective: To identify how the current-induced magnetic fields affect fMRI data and establish a quantitative framework for evaluating their impact on concurrent tDCS-fMRI measurements. Methods: Magnetic fields induced by currents inside the head and electrode cables were calculated for a standard motor cortex montage. Their effects on echo-planar images (EPI) were simulated based on a framework derived from MR physics first principles and validated using phantom experiments. The framework was applied to artificially induce artifacts related to the tDCS current flow in current-free fMRI time series from 5 participants. These were compared to active runs from the same participants where tDCS intensity was varied in a block design. Results: Currents in the electrode cables were the main contributors to the current flow-related artifacts in the EPI images, which occurred both locally by causing geometric distortions and remotely by affecting the dynamic update of the scanner demodulation frequency. The artificially induced fMRI activations corresponded well to those measured during real tDCS on the single-subject level for intensities of 2 mA and higher. Conclusion: The current-induced magnetic fields can cause intensity changes comparable to typical BOLD responses. Their impact on the statistical results depends on the chosen experimental design (electrode locations, cable paths, imaging parameters, fMRI paradigm). The simulation framework provides a principled approach to evaluate the impact of these artifacts during the design and data analyses of concurrent tDCS-fMRI studies.
Liu, K.; Uludag, K.; de Coo, I. F. M.; Smeets, H. J. M.; Jansen, J. F. A.; Formisano, E.; Poser, B. A.; Haast, R. A. M.; Ivanov, D.
Show abstract
Introduction: Structural neuroimaging relies on T1-weighted (T1w) magnetic resonance imaging (MRI) for brain morphometry, yet at 7 Tesla (7 T) transmit field (B1+) inhomogeneity remains a major source of bias. Although Magnetization Prepared 2 Rapid Acquisition Gradient Echoes (MP2RAGE) improves the tissue contrast, residual B1+ effects may persist and may be exacerbated in aging or clinical populations, where anatomical and physiological factors further challenge image quality and preprocessing. The impact of B1+ inhomogeneity on automated quality assessment and morphometric statistical inference remains insufficiently understood. Methods: Submillimeter 7 T MP2RAGE brain acquisitions from carriers of a mitochondrial gene mutation (m.3243A>G) and controls were retrieved from previous studies. Image quality before and after B1+ inhomogeneity correction was assessed by multiple automated pipelines. Case-control morphometric studies, including regional volume and mean cortical thickness, were analyzed in both registration based and deep learning based segmentation frameworks. Changes in image quality metrics (IQMs) and morphometric statistical significance were evaluated to determine the impact of B1+ inhomogeneity correction. Results: Overall image quality rating and metrics sensitive to intensity non-uniformity and topological integrity consistently improved after B1+ inhomogeneity correction. However, its impact on morphometric statistical inferences was strongly method-dependent. Some pipelines showed redistribution of significant regions, whereas others predominantly demonstrated increased effects in sensitivity. Across methods, B1+ inhomogeneity correction altered the findings of morphometric analyses, particularly in cortical regions. Conclusion: Residual B1+ inhomogeneity at 7 T substantially influences both image quality control and morphometric evaluations. Current automated quality control approaches can hardly capture these effects reliably. B1+ inhomogeneity correction will not only improve intensity uniformity, but also change sensitivity of morphometric statistical inferences. To establish reliable morphometric biomarkers at UHF strengths, explicit B1+ correction and customized preprocessing are practically necessary and highly recommended.
Chen, Y.; Ge, Q.; Li, H.; Kang, X.; Chen, Q.; He, W.; Sun, Y.; Zhang, S.; Laureys, S.; Chen, X.; He, J.; Gao, X.
Show abstract
The objective assessment of patients with disorders of consciousness (DOC) remains a significant clinical challenge. Behavioral scales like the Coma Recovery Scale-Revised (CRS-R) are susceptible to rater subjectivity and have difficulty in detecting patients with cognitive-motor dissociation (CMD), while existing electrophysiological paradigms typically evaluate isolated processing levels, especially in visual functions. To address these limitations, we developed a novel, hierarchical visual EEG framework that evaluates three progressive tiers of visual processing--sensory input, selective attention, and object discrimination--within a single, unified paradigm. This framework uses steady-state and event-related potentials, analyzed with statistical testing and machine learning, to provide objective detection. In a cohort of 85 participants, the framework demonstrated a robust alignment with behavioral CRS-R levels and successfully identified CMD patients missed by bedside behavioral examinations. Notably, model predictions derived from this framework showed a significant correlation with 3-month clinical outcomes. This prognostic utility generalized effectively and remained consistent across distinct EEG acquisition systems in an independent validation cohort of 17 patients. In summary, this work offers electrophysiological validation for the hierarchical design of the CRS-R and provides a practical tool for bedside objective assessment of DOC.
Atkins, C.; Wu, T.; Bujak, B.; Inati, S.; Kellman, P.; Nair, G.
Show abstract
Most high-field MRI scanners conduct imaging using phased-array coils, in which the signals received by an array of coil elements are combined for downstream processing. Optimally combining these signals requires knowledge of each coil's spatial sensitivity profile, which can be acquired from a volume coil with homogeneous sensitivity across the field-of-view. However, this approach is not often used on high-field MRI scanners, especially on non-clinical systems; therefore, this work uses an algorithm based on the singular-value decomposition (SVD), called SVD-B1, to estimate coil sensitivities directly from the array data itself. Images produced by SVD-B1 are devoid of wormhole artifacts and open-ended fringe lines commonly seen in more conventional reconstructions. Quantitative Susceptibility Maps (QSMs) produced using the algorithm were compared to those produced using other combination algorithms across clinically relevant regions of in-vivo and postmortem human brains. As progressive levels of simulated noise were added to the data, SVD-B1's QSMs were up to 3% (in-vivo) and 13% (postmortem) more consistent (as measured by their Intraclass Correlation Coefficient) than those from other algorithms. Additionally, these QSMs were up to 8.5% (in-vivo) and 36% (postmortem) more accurate than other QSMs with respect to a "single-coil" reference. A parallel imaging extension of SVD-B1, called SVD-B1 GRAPPA, achieved similar results for QSMs generated from progressively more accelerated acquisition data. These results show that SVD-B1 can improve the sensitivity of high-resolution QSM to subtle changes in fine-grained tissue structures (e.g., in neurodegenerative disease) and help reduce scan times in clinical settings where shorter scans are imperative.
Bhuyan, A.; Wong, M.; McEwan, A.; Higgins, C.; Cooray, N.
Show abstract
With the emergence of electroencephalography (EEG) as a tool in the cognitive domain, new demands are being placed on the technology to keep up with functional applications, especially in the context of at-home neural monitoring. New use cases have fostered development of wearable EEG (wEEG) devices: portable, low-cost headsets used for EEG monitoring. This evolution of technology and application has not been accompanied by development in technology evaluation, often relying on function-agnostic markers to assess devices for efficacy in this new space. With current methods limited in scope, this study designed, tested and evaluated a novel functionally-focused comparative protocol for wEEG devices. Eight participants undertook a protocol for the evaluation of four established wEEG devices, assessing cognitive resolution and general usability. Compared to a well-established traditional analysis method (eyes open/eyes closed protocol), the novel design proposed here enabled the same analysis of headset resolution, while also providing additional context into user preferences and opening downstream possibilities for specific cognitive insights. Future research could enable the development of this protocol into a standardised method to ensure the performance of wEEG technology can satisfy emerging clinical needs.
Bradford, L. E.; Ringshaw, J. E.; Malaba, T. R.; Bourke, N. J.; Wedderburn, C. J.; Williams, S. C.; Deoni, S.; Reynolds, H.; Read, J.; Read, L.; Waitt, C.; Mrubata, M.; Stemmet, L.-A.; Davel, L.; Colbers, A.; Wang, D.; Khoo, S.; Myer, L.; Donald, K. A.
Show abstract
Background Children in low- and middle-income countries (LMICs) face an elevated risk of developmental delay, yet scalable neuroimaging tools to study early brain development in these contexts remain limited. Children who are HIV-exposed but uninfected (CHEU) represent a growing population with evidence of language and motor delays and altered brain development compared with children who are HIV-unexposed (CHU). Ultra-low-field (ULF) MRI offers a more affordable alternative to conventional high-field (HF) MRI, but its application in early childhood remains underexplored. Methods We compared brain volumes derived from ULF (64mT) and HF (3T) MRI in South African CHEU and CHU as part of the DolPHIN-2 PLUS study. Volumetric segmentation was performed using FreeSurfer v7.4.1 and SynthSeg on the Flywheel platform. Agreement between modalities was assessed using Pearsons and Lins concordance correlation coefficients across global and subcortical regions. Associations between ULF-derived brain volumes and developmental outcomes, measured by the Bayley Scales of Infant Development, Third Edition, were evaluated using partial correlations adjusted for sex and age. Results Forty-five children (9 CHEU, 36 CHU; mean age 45.6 months) had paired ULF and HF scans of usable quality. Strong correlations were observed between ULF and HF volumes for global white and grey matter regions (r > 0.92) and larger subcortical grey matter structures such as the thalamus, caudate, and putamen (r = 0.86-0.89). Moderate-to-weak correlations were evident in smaller structures (hippocampus, pallidum, amygdala). ULF underestimated most grey matter volumes, and overestimated total white matter volume relative to HF. ULF-derived global and subcortical volumes were associated with receptive and expressive communication (r = 0.34-0.59, all p < 0.05). Conclusions ULF MRI produces brain volume estimates comparable to HF MRI and captures meaningful associations with early language development. These findings support ULF MRI as a feasible and scalable tool for studying neurodevelopment in vulnerable paediatric populations in LMICs.
Park, H.; Hacker, C.; Cho, H.; Xie, T.; Simmons, A.; Tan, G.; Leuthardt, E. C.; Brunner, P.; Willie, J.
Show abstract
Normal emotional experience depends on dynamic modulation of neural excitability across limbic and prefrontal circuits, yet the spectral markers that reflect these shifts in humans remain incompletely understood. In this study, we combined a validated video-based emotion induction paradigm with stereotactic electroencephalography (SEEG) in 31 patients with drug-resistant epilepsy to investigate how positive and negative affective states modulate oscillatory and aperiodic (asynchronous) neural activity. Using spectral parameterization to dissociate oscillatory power from the aperiodic 1/f component, we found that emotional valence robustly altered the aperiodic slope in a regionally specific manner: negative valence flattened the slope in thalamus, posterior insula, and posterior cingulate cortex, whereas positive valence produced flattening in dorsolateral prefrontal cortex. Simultaneous oscillatory changes included increased high-frequency activity and decreased alpha/beta power during negative affect, and reduced alpha power during positive affect, which were elucidated after adjusting for broadband aperiodic spectral shifts. These effects persisted after controlling for audiovisual stimulus or physiological features and were not evident in simultaneously recorded scalp EEG, underscoring their localization to intracranial sites. Together, these results provide the first direct evidence that active induction of emotional states modulates the aperiodic slope of human intracranial field potentials, reflecting valence-dependent shifts in local circuit excitability. The findings highlight the 1/f slope as a sensitive neural marker of affective brain states and for mood dysregulation.
Angiolelli, M.; Demuru, M.; Lopez, E. T.; Hashemi, M.; Ziaeemeh, A.; Rabuffo, G.; Trojsi, F.; Granata, C.; Tafuri, D.; De Luca, M.; Gallo, E.; Jirsa, V.; Depannemaecker, D.; Sorrentino, P.
Show abstract
Amyotrophic lateral sclerosis (ALS) is increasingly recognized as a multisystem neurodegenerative disorder in which motor-neuron degeneration is accompanied by widespread alterations in cortical dynamics. Among its most reproducible neurophysiological signatures is cortical hyperexcitability, yet how this local excitability imbalance shapes distributed whole-brain activity remains poorly understood. Here, we combined source-reconstructed resting-state MEG data, tractography-informed whole-brain modeling, and simulation-based inference to investigate whether ALS-related alterations in large-scale brain dynamics can be mechanistically explained by changes in cortical excitability. First, we characterized empirical brain dynamics using complementary features spanning regional activity amplitude and variability, functional connectivity, and avalanche-based metrics. These analyses revealed significant alterations in ALS patients relative to healthy controls, as well as associations with clinical impairment and disease staging. To mechanistically interpret these changes, we employed a reduced Wong-Wang whole-brain model in which local recurrent excitation modulates emergent large-scale neural dynamics. Simulations showed that increasing excitability systematically reproduced the empirical dynamical signatures observed in ALS. We then applied a simulation-based inference framework to estimate latent excitability parameters directly from empirical observations. Whole-brain model inversion revealed increased excitability in ALS patients compared with controls. The recovered excitability parameter was associated with disease staging, supporting its clinical relevance as a model-derived descriptor of ALS progression. Finally, by extending the model to estimate frontal and non-frontal excitability separately, we found that ALS-related alterations were predominantly associated with increased frontal excitability, whereas non-frontal regions appeared comparatively less affected. The recovered parameters related to disease staging. Together, these findings provide a mechanistic framework linking altered large-scale brain dynamics in ALS to selective cortical hyperexcitability, explaining how local excitability changes can give rise to global network reorganization. More broadly, they show how computational model inversion can recover latent multiscale pathophysiological processes from empirical neural recordings, offering a non-perturbative alternative to complex experimental paradigms typically required to causally probe local-to-global mechanisms.
Zheng, Y.; Feng, B.; Cheng, R.; Qiu, C.; Long, Z.; Vaziri, K.; Hahn, J.
Show abstract
Accurate assessment of body composition is important to risk stratification and management of metabolic, musculoskeletal, and aging-related diseases, yet reference modalities such as Dual-energy X-ray absorptiometry (DXA) are costly and impractical for frequent monitoring. Commodity 3D body scans offer a low-cost, radiation-free alternative, but extracting meaningful and predictive shape features from scans remains challenging due to nonuniform point density, variable body size and cross-device differences. We introduce BodyMAE, a self-supervised, surface-area aware masked autoencoder for metric-scale 3D body scans. The pipeline integrates area-adjusted sampling, a long-range focused encoder, and a lightweight decoder regularized to promote locally uniform reconstructions. Trained and evaluated on 917 paired 3D body scans paired with clinical DXA reports, BodyMAE achieves strong accuracy on fat percentage (root-mean-square error (RMSE) 3.825 percentage points, R^2 0.908), fat mass (RMSE 3.694 kg, R^2 0.968), and lean mass (RMSE 3.608 kg, R^2 0.901), with competitive performance on bone mineral content (RMSE 0.284 kg, R^2 0.754).We also assess feature stability across pretrained baselines, finding higher retrieval accuracy for our representations (Top-1 90.131%). These results indicate that combining metric-aware sampling, long-range relational encoding, and local geometric regularization enables accurate body composition estimation from 3D body scans, as validated by comparisons to DXA-derived measurements.
Nagori, A.; Singh, P.; Firdos, S.; Devadiga, A.; Vats, V.; Gupta, A.; Bandhey, H.; Ailavadi, P.; Awasthi, R.; Narotam, N.; Mishra, A.; Lodha, R.; Sethi, T.
Show abstract
High-frequency physiological monitoring in ICUs can identify impending deterioration hours before clinical recognition yet extracting reliable early-warning signals from noisy vital-sign streams remains challenging. We present SIgnose, an interpretable prediction framework for early detection of abnormal shock index (SI), built from routinely monitored vital signs using physiologic variability and nonlinear time-series features. SIgnose was developed on the eICU Collaborative Research Database and externally validated on the MIMIC-III adult database and a pediatric SafeICU cohort (AIIMS New Delhi), with additional prospective validation in the pediatric ICU. We benchmarked three representation strategies: (i) engineered physiologic variability and nonlinear time-series features, (ii) deep learning, and (iii) Llama-3.1-8B embeddings with low-rank adaptation. Physiologic variability features consistently demonstrated superior cross-cohort generalization. The final model used 3,970 features from five vital signs to predict abnormal SI up to 8 hours ahead, achieving AUROC 0.861 (95% CI 0.859-0.863) and AUPRC 0.927 (95% CI 0.925-0.929) on eICU. External validation yielded AUROC 0.870 (95% CI 0.863-0.876) and AUPRC 0.935 (95% CI 0.930-0.940) on MIMIC-III, and AUROC 0.875 (95% CI 0.863-0.888) and AUPRC 0.915 (95% CI 0.898-0.930) on SafeICU; prospective pediatric validation (n = 88) achieved AUROC 0.885 (95% CI 0.868-0.902) and AUPRC 0.911 (95% CI 0.882-0.936). SHAP interpretability analysis identified heart rate variability, respiratory trend dynamics, and multi-scale blood pressure variability as key early-warning signatures. These findings establish SIgnose as a reproducible, low-compute, early-warning framework and demonstrate that physiologic variability features provide robust, generalizable representations for early deterioration detection across adult and pediatric critical care.
Ryan, M. A.; El Jammal, R.; Soubra, S.; Paulo, D.; Bentley, J. H.; Hamre, T. A.; Giridharan, N.; Suzuki, H.; Vanegas Arroyave, N.; Storch, E. A.; Banks, G. P.; Goodman, W. K.; Provenza, N. R.; Sheth, S. R.; Heilbronner, S. R.
Show abstract
Background: Obsessive-compulsive disorder (OCD) is characterized by disturbing thoughts (obsessions) that initiate anxiety-reducing thoughts or behaviors (compulsions). For patients with treatment-resistant OCD (tr-OCD), neuromodulation techniques, like capsulotomy (a lesion in the anterior limb of the internal capsule) and deep brain stimulation (DBS), have emerged as interventions that likely regulate connectivity between the prefrontal cortex (PFC) and subcortical targets. Three patients (Cap-DBS1-3) underwent a failed capsulotomy followed by successful DBS. Here, we aimed to understand the brain connections disrupted by failed capsulotomy vs modulated by successful DBS. Methods: We used diffusion-weighted magnetic resonance imaging (dMRI) tractography in a control cohort with tr-OCD (n=12) and in two of the Cap-DBS patients themselves to determine connectivity profiles of the capsulotomy, volume of tissue activated (VTA), and potentially necessary tracts (VTA minus capsulotomy tracts). We used whole-brain, PFC-focused, and subcortically-focused tractography algorithms to fully explore the space of possible connections. Results: Capsulotomy regions-of-interest (ROIs) connected with a variety of PFC and subcortical regions. VTA ROIs and potentially necessary tracts had limited and inconsistent PFC connectivity but substantial subcortical connectivity. While correlated to the average OCD connectome (r = 0.214, 95% CI [0.177, 0.251]; r = 0.756, 95% CI [0.739, 0.772]), the Cap-DBS connectomes had many edges that were stronger (z-score > 3). Conclusions: The connectivity profile of potentially necessary tracts for successful DBS treatment after failed capsulotomy revealed a surprising proportion of subcortical regions and inconsistent PFC involvement, highlighting an often-ignored set of connections that may be critical to effective DBS.
Warnecke, J. M.; Baumgärtel, D.; Bollmann, J.; Deserno, T. M.
Show abstract
Background Continuous health monitoring enables early detection of diseases and improves therapeutic outcomes. Non-intrusive biosignal sensors, such as capacitive ECG (cECG), offer a practical solution for daily monitoring in private environments, such as smart homes and vehicles. However, artifacts reduce signal quality and compromise reliability. Methods Following a registered report protocol (Warnecke JM et al. Plos One. 2021; 16(7):e0254780), we record data of 44 subjects and develop an artifact index for cECG. We use three signal quality indices (SQIs): the correlation of QRS complexes (corSQI), the R-peak detection consistency (bSQI) and the absolute amplitude ratio (aSQI). Our index classifies overlapping 10s segments with a step-width of 2s into clean or artifact segments. We label a 2s interval as artifacts if all five overlapping segments indicate artifacts. We record cECGs using an armchair with integrated electrodes in a single-arm study involving 44 subjects performing two activities -- reading and watching television (TV); for 11 minutes each. We record a time-synchronized reference ECG with skin electrodes on the chest. To evaluate the artifact index, we compare it with manually generated ground truth. Moreover, we evaluate the clothing materials cotton, linen, jeans, and polyester in 5 subjects. Results Watching TV results in longer, continuously clean signal durations than reading. On average, 88.3% of the signal has a minimum continuous clean duration of 10s, versus 79.8% during reading. All clothing configurations achieve a clean signal duration exceeding 10s. Among the SQI metrics, bSQI performs best, achieving an accuracy of 90.7% and an F1 score of 79.9%. Combining the three SQI metrics in a voting approach improves accuracy to 92.0% and F1 score to 82.1%. Discussion Our artifact index automatically distinguishes clean from artifact cECG segments, promoting health monitoring in unsupervised real-world settings, earlier disease detection, and preventive health management. A limitation is the investigation of only two scenarios (reading and watching TV).
Mandl, S.; Chung, H.; An, W. W.; Thomas, R. P.; Bose, A.; Faja, S.; Wilkinson, C. L.
Show abstract
Although language acquisition delays are frequently observed in children with autism spectrum disorder (autism), our current understanding of the neurobiological mechanisms underlying language development in autism is sparse. Previous studies have found resting-state electroencephalography (EEG) power to be associated with language abilities in autistic children. However, longitudinal studies examining resting-state EEG phase coherence in relation to language development in preschool-aged children with autism are limited. This study aimed to characterize age- and group-related changes in whole-brain coherence in neurotypical children and in autistic children with and without language delay. Resting-state EEG and language data were collected at 2, 3, and 4 years of age. Peak phase coherence within the alpha band (6-11 Hz) was calculated at each timepoint and differences in the developmental trajectory of peak alpha coherence (PAC) were analyzed. In neurotypical children, PAC increased between 2 and 4 years of age. In contrast, PAC did not significantly change with age in children with autism. However, when examining autistic children based on language delay status, PAC increased with age in autistic children without language delay, but not in children with language delay. Exploratory analysis revealed evidence for an interaction between PAC and age, suggesting that the direction of the association between PAC and VDQ varied across age. Overall, these results support previous findings of altered oscillatory connectivity in autism and suggest that differences become apparent early in development. Importantly, phase coherence may not only differentiate diagnostic groups but also capture meaningful variability within the autism group. Future research should further investigate the use of EEG coherence as a biomarker of language development in autism.
Lee, S. Y.; Nashiro, K.; Min, J.; Yoo, H. J.
Show abstract
Using data from a randomized clinical trial, we examined whether daily biofeedback training that modulates heart rate oscillations is associated with changes in microstructural brain texture in Alzheimer's disease signature cortical (ADSC) and hippocampal regions. Younger and older adults were randomly assigned to one of two daily biofeedback practices for five weeks: slow-paced breathing designed to increase heart rate oscillations (Osc+) or self-selected strategies aimed at decreasing oscillations (Osc-). Intervention effects were observed in both ADSC and hippocampus regions and were confined to a composite texture factor dominated by uniformity and entropy. Across regions, effects were expressed primarily as Time x Condition interactions, indicating differential texture trajectories between Osc+ and Osc-. In the hippocampus, this pattern was further qualified by a Time x Condition x Age Group interaction, reflecting more pronounced effects in older adults, whereas younger adults showed no reliable texture modulation. Partial least squares correlation analyses further demonstrated that training-related texture changes in the left hippocampus, right fusiform gyrus, and right entorhinal cortex covaried with concurrent changes in plasma AD-related biomarkers, with tau- and p-tau related measures contributing most strongly to the multivariate association. Together, these findings suggest that HRV biofeedback may selectively influence specific dimensions of brain microstructural texture and that such changes are meaningfully coupled with plasma AD-related biomarker profiles.
Rodriguez-Soto, A. E.; Schuchardt, E. L.; Narayan, H. K.; Printz, B. F.; Hegde, S.; Hopkins, S. R.; Contijoch, F.
Show abstract
Purpose: To quantify the contributions of signal-to-noise ratio (SNR) and velocity-to-encoding ratio (v/VENC) to velocity uncertainty in phase-contrast (PC) MRI and to develop a framework for in vivo voxel-wise uncertainty estimation. Methods: Through-plane 2D PC-MRI of the ascending aorta was acquired using multiple velocity encodings (150, 200, 300 cm/s) and flip angles (0, 5, 15, 20 degrees) to vary v/VENC and SNR. Voxel-wise SNR and velocity uncertainty maps were generated using empirically calibrated phase-noise modeling. Phase-resolved subject-level analyses were performed to quantify the relative contributions of SNR and |v|/VENC to percent velocity uncertainty (%unc). Uncertainty was propagated to flow, stroke volume (SV), and cardiac output (CO). Results: Velocity uncertainty varied substantially across the cardiac cycle and depended on both SNR and |v|/VENC. Across cardiac phases, |v|/VENC accounted for most explained variance in %unc (partial R2=0.666), while SNR provided a smaller but meaningful contribution (partial R2=0.287; full R2=0.909). Near peak systole, SNR contributed more strongly while overall uncertainty remained low. In contrast, diastolic %unc became unstable as velocity approached zero. These effects were most pronounced at low |v|/VENC, where higher VENC settings increased uncertainty despite similar SNR. SV uncertainty ranged from 0.27% to 1.07% across VENCxFA protocols. Conclusion: Velocity uncertainty in PC-MRI depends on both SNR and VENC adequacy in a physiologically phase-dependent manner. Relative uncertainty may become inadequate for precise quantification in low-flow applications, such as diastolic regurgitant jets, despite adequate SNR. Spatiotemporal uncertainty mapping provides a framework for uncertainty-aware PC-MRI acquisition and interpretation.
So, I.; Lombardi, J.; Staffaroni, A. M.; Coleman, K.; Bouzigues, A.; Ferry-Bolder, E.; Cullen, E.; Russell, L.; Foster, P.; Farley, S.; Convery, R.; van Swieten, J. C.; Jiskoot, L. C.; Seelaar, H.; Galimberti, D.; Vandenberghe, R.; Laforce, R.; Bruffaerts, R.; Bertoux, M.; Lebouvier, T.; Solje, E.; Levin, J.; di Fede, G.; Thompson, A.; Le Ber, I.; Migliaccio, R. L.; Kortvelyessy, P.; Schroeter, M. L.; Logroscino, G.; Otto, M.; Uzelac, Z.; Illan-Gala, I.; Kruger, J.; Nacmias, B.; Gerhard, A.; Langheinrich, T.; Ducharme, S.; Santana, I. J.; Tartaglia, C.; Masellis, M.; de Mendonca, A.; Rowe, J.;
Show abstract
Background and Objectives: Converging evidence hints at neurodevelopmental effects in genetic frontotemporal degeneration (FTD). In cross-sectional studies, for some genes, young adult FTD variant carriers show differences in brain volumes and cognition compared to familial non-carriers. However, longitudinal trajectories may more sensitively capture FTD-related neurodevelopmental vs. neurodegenerative changes than cross-sectional approaches. This study examined longitudinal trajectories of brain volumes, executive function, and plasma biomarkers in young adult carriers compared to familial non-carriers, as measures of neurodevelopmental and neurodegenerative outcomes of FTD-causing variants. Methods: This longitudinal cohort study comprised participants, aged 18-30 years, from the FTD Prevention Initiative across Europe, Canada, and the USA. Genetic groups included C9orf72 (47%), MAPT (30%), and GRN (23%). Linear mixed-effects models were computed to assess longitudinal outcomes across age between groups, controlling for sex, scanner (for brain volumes), and education (for executive function); random effects accounted for between-subject variability nested within family membership. Results: Variant carriers (n=147) and familial non-carriers (n=113) did not differ in age (mean{+/-}SD, 25.9{+/-}3.2 years), sex (53% female), or number of visits (2.1{+/-}1.7). Young adult C9orf72 repeat expansion carriers exhibited smaller thalamic volumes than non-carriers at the reference age of 26 years (b=-982.8mm3, SE=317.0, p=0.0046, f2=0.32), with relatively stable trajectories across ages 18-30 (i.e., no change over time). Trajectories of rostral anterior cingulate volumes differed in C9orf72 carriers and non-carriers across age, where carriers showed relatively stable trajectories and non-carriers showed age-appropriate declines (b=64.4mm3, SE=29.9, p=0.035, f2=0.07). For MAPT and GRN, there were little to no differences in total brain, cortical, or subcortical volumes between groups and over time. No longitudinal differences were observed between carriers and non-carriers in executive function, or plasma NfL or GFAP for any genetic group. Discussion: C9orf72 repeat expansions were linked to smaller average thalamic volumes and stable trajectories between ages 18 to 30, supporting potential neurodevelopmental origins. The modest evidence supporting an absence of difference in neurodegenerative biomarkers and executive function suggests minimal early neurodegeneration and functional preservation in young adulthood.
Schmidt, P.; Preskorn, S.
Show abstract
In February 2026, the FDA announced that a single pivotal phase 3 (P3) trial would become the new default standard for drug approval - a regulatory direction that had been legally enabled since the FDA Modernization Act of 1997. This announcement has strategic, scientific, and economic implications for drug developers, contract research organizations (CROs), and biotech investors. We argue that the expansion of this framework, originally reserved for various niche submissions, represents a paradigm change, dramatically increasing the value of rigorous early phase (P1 and P2) trial design, requiring sponsors to establish both statistical efficacy signals and mechanistic biological understanding before entering phase 3. Using a CNS indication cost model, we show that single P3 approval can reduce total development expenditure from approximately $447 million over 14 years to $297 million over 12 years - a savings of $150 million and providing two years of additional commercial runway for a modeled CNS drug. Case examples including lecanemab, omaveloxolone, and tofersen illustrate how biomarker-informed early phase strategies can establish the confirmatory evidence necessary for single-trial approval. We provide practical guidance for maximizing the value of P1 and P2 under this evolving framework.
Kapoor, A.; Ni, Y.; Isaac, G.; Keyes, D. C. V.; Russo-Stringer, E. A.; Legon, W.
Show abstract
Background: Low-intensity focused ultrasound (LIFU) is an emerging noninvasive neuromodulation technique capable of targeting deep cortical and subcortical structures with high spatial precision. In healthy human volunteers, LIFU has demonstrated a favorable safety and tolerability profile across multiple studies. However, its safety and tolerability in clinical populations remains poorly characterized, representing a critical barrier to clinical translation. Here, we prospectively evaluate the safety and tolerability of LIFU targeting the left dorsal anterior insula (dAI) in patients with fibromyalgia (FM). Methods: In a single-blind, sham-controlled, within-subjects crossover design, 13 individuals with FM (43.1 +/- 13.2 years; 12 female) received 10 minutes of active LIFU (500 kHz, 1 kHz PRF, 36% duty cycle, 4.2 W/cm2 Isppa; 100 x 1-second pulse trains with a 5-second inter-train interval) targeting the left dorsal anterior insula (dAI) or sham on separate visits. Safety was evaluated through neuroradiological review of post vs. pre LIFU FLAIR MRI, quantitative voxel-wise FLAIR analysis, and patient report of symptoms (ROS). Tolerability was assessed using an experience assessment. Efficacy of the LIFU intervention was assessed using quantitative sensory testing (QST) including temporal summation of pain (TSP) and conditioned pain modulation (CPM). Results: Neuroradiological review identified no new evidence of edema, microhemorrhage, acute ischemia, or white matter injury on post-LIFU structural imaging. Quantitative FLAIR analysis using contralateral-mirror-referenced relative FLAIR (rFLAIR) showed no significant within-subject change in the stimulated beam volume (delta rFLAIR = 0.002 +/- 0.025, t(12) = 0.30, P = 0.769, Cohen's dz = 0.08). No serious adverse events were documented and ROS indicated no change due to LIFU sonication. Participants rated the procedure as comfortable and could not distinguish active from sham LIFU. LIFU did not result in statistically significant changes for TSP (p = 0.797) or CPM (p = 0.465). Conclusions: Ten minutes of LIFU targeting the left dAI was safe and well tolerated in individuals with FM, with no neuroradiological or quantitative MRI evidence of tissue effects and no serious adverse events. Blinding was preserved, and participants rated the procedure as comfortable. Although no significant changes were observed in experimental pain measures, these findings support the feasibility of targeting deep salience and pain amplification circuitry with LIFU in patients with FM and provide a foundation for adequately powered efficacy trials.
Overmars, L. M.; Allaart, C.; Bron, E. E.; Brunner La Rocca, H.-P.; de Bresser, J.; Muller, M.; van Osch, M. J. P.; Teunissen, C.; Tijms, B. M.; Wolters, F. J.; Biessels, G. J.; Heart-Brain Connection Consortium,
Show abstract
Background: Vascular cognitive impairment (VCI) and small vessel disease (SVD) involve many interconnected factors influencing multiple outcomes, also beyond cognitive decline. Bayesian networks (BNs) can help unravel these complex interrelations, which we demonstrate in this proof-of-concept study in the Heart-Brain Connection cohort, including memory-clinic patients with SVD, patients with heart failure, carotid occlusive disease, and reference participants. Methods: We trained BNs and jointly modelled cognitive decline (Clinical Dementia Rating (CDR) increase) and major adverse cardiovascular events (MACE) over five years as outcomes in relation to multiple demographic and disease factors and emerging imaging and plasma biomarkers, also considering possible non-random dropout. Results: Of 566 individuals (median age 68, 64% men), 134 had MACE and 112 experienced CDR increase. Diagnostic group and baseline cognition were key determinants of both outcomes. The BN identified baseline clinical severity as a non-random dropout source. Plasma biomarkers formed an interconnected subnetwork, linked to demographic and vascular factors, but without direct dependencies with outcomes. The trained BN also provides individualized inference under partial evidence, informing on outcome probabilities. Conclusion: This proof-of-concept study demonstrates how BNs quantify and visualize the dependency structure underlying prognostic heterogeneity in VCI and SVD, including non-random dropout and positioning of emerging biomarkers.
Nolan, G.; Holland, N.; Yang, S. W.; Dall'O, G. M.; Chen, Q.; Allinson, K.; Savulich, G.; Halliday, K.; Naessens, M.; Hong, Y. T.; Fryer, T. D.; Aigbirhio, F. I.; Malpetti, M.; Kaalund, S. S.; O'Brien, J. T.; Lakatos, A.; Rowe, J. B.; Quaegebeur, A.
Show abstract
Synapse loss is an early feature of neurodegeneration and may provide sensitive biomarkers for experimental medicine. Positron emission tomography (PET) with the synaptic vesicle glycoprotein 2A radioligand [11C]UCB-J shows widespread signal reduction across dementias. However, it remains unclear which aspects of synaptic integrity [11C]UCB-J PET measures. We developed a histological-imaging pipeline to quantify structurally intact synapses in post-mortem brain tissue. We applied it to six donors with the tauopathy progressive supranuclear palsy (PSP) who had ante-mortem [11C]UCB-J-PET, alongside six controls across 11 brain regions. Synapse loss in PSP was widespread but region-specific across cortical, subcortical, and brainstem regions. Greater synapse loss was associated with higher tau burden and pathology, and cortical synaptic density correlated with ante-mortem cognition. Post-mortem synaptic density correlated with in vivo [11C]UCB-J-PET signal. This study provides validation of SV2A PET as a biomarker of synaptic density and supports integration of imaging with histopathology in neurodegenerative disease research.